PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_17129A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 205aa    MW: 22719.5 Da    PI: 4.9004
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_17129AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72e-251059251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               rien   rqvtfskRr g++KKAeEL vLCda+v +i+fs tgkl  ++s
  Oropetium_20150105_17129A 10 RIENVAARQVTFSKRRRGLFKKAEELAVLCDADVTLIVFSATGKLSQFAS 59
                               8*********************************************9986 PP

2K-box22.25.8e-09871441670
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.273161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-34160IPR002100Transcription factor, MADS-box
CDDcd002657.72E-36279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-28376IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003192.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-243859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.30.460.102.3E-44096No hitNo description
PROSITE profilePS512977.88788188IPR002487Transcription factor, K-box
PfamPF014862.0E-796145IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAREKREIRR IENVAARQVT FSKRRRGLFK KAEELAVLCD ADVTLIVFSA TGKLSQFASK  60
SSSMNEIIDK YNTQAKNLQK SQQPSLDLNL EHSKNADLND QLAEASLQLR QMRGEELERL  120
SAEELHQMEK KLEAGLHRVL TTKGIQLEDE NMPQVPIAVT GMVATDTENV LAEDEQSSES  180
VMTALHSGSS PDYDDGSDTS LKLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-15271168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-15271168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-15271168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D2e-15271168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A2e-15271168Myocyte-specific enhancer factor 2A
3kov_B2e-15271168Myocyte-specific enhancer factor 2A
3kov_I2e-15271168Myocyte-specific enhancer factor 2A
3kov_J2e-15271168Myocyte-specific enhancer factor 2A
3p57_A2e-15271168Myocyte-specific enhancer factor 2A
3p57_B2e-15271168Myocyte-specific enhancer factor 2A
3p57_C2e-15271168Myocyte-specific enhancer factor 2A
3p57_D2e-15271168Myocyte-specific enhancer factor 2A
3p57_I2e-15271168Myocyte-specific enhancer factor 2A
3p57_J2e-15271168Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964865.11e-102PREDICTED: MADS-box transcription factor 55-like
SwissprotQ9XJ663e-92MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLI1IEY21e-100I1IEY2_BRADI; MADS-box transcription factor 30
STRINGBRADI3G58220.12e-99(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.15e-58MIKC_MADS family protein